## DeepView Tutorial

Gale Rhodes
Contact Information

Do you know about the
Grameen Foundation?

## Contents

### Overview

1. Getting Started

2. Windows and Help

3. Manipulating the Model

4. Selecting and Displaying

5. Coloring

6. Measuring and Labeling

Assessing Your Command
of DeepView: Assignment 1

7. Mutating and Changing
Side-Chain Conformations

8. Using a Ramachandran Plot

9. Judging the Quality of Models

10. Working with
Oligomeric Proteins

11. Comparing Proteins

Assessing Your Command of
DeepView: Assignment 2

12. Advanced Tutorials and Projects

MORE TUTORIALS at DV Home.

Under construction,
or on wish list:

Making Images for Publication

Surfaces

Homology Modeling
(with intro to human genome searching)
A homology modeling project that shows what can go wrong.

Bioinformatics and Homology Modeling
(exploring human visual pigments)
Includes a homology modeling project that shows what can go right.

Multiple Sequence Alignments

Open in a separate window:

Protein Data Bank

#### Viewing in Stereo

#### Actions of Key Modifiers

#### DeepView Home

#### DeepView USM Mirror
(faster service for US users)

#### DeepView User Guide

To Use Tutorial Off-line

Click here to download the tutorial pages for off-line use (for version 3.9—version 4.0 revision will replace the old archive when complete). This is a zip archive. Use Zipit or Stuffit Expander with Dropstuff/Expander Enhancer (Mac), or Winzip (Windows) to open the archive. Then open the file index.html with your browser and proceed as usual.

Links to pages outside the main tutorial directory still require on-line access.

To Biochemistry Resources

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